PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008571

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 215aa MW: 24990.7 Da PI: 9.2864

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008571	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.7	2.2e-23	43	141	1	90
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 f+kvl +sdv++++rl++pk+fa +h ++ + + + ++d + W+++++++k+s++yv+t+ W++Fvka +L++gD+v+F+ ++g+++ DCAR_008571 43 FKKVLAKSDVGRLSRLIIPKRFAIQHfpsidvnARIEDCVFHIDFYDGLKNLWTFRYCFWKCSRSYVFTGAWNKFVKAYELQAGDSVLFYknYSGDES 140 89*************************999977778999***********************************************55555433 PP E CS B3 90 f 90 f DCAR_008571 141 F 141 3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.6E-28	36	140	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-25	41	134	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.86E-23	41	147	No hit	No description
Pfam	PF02362	2.1E-20	43	141	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-13	43	145	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	43	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MMRYDTSLNC NAWLSAPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII 60 PKRFAIQHFP SIDVNARIED CVFHIDFYDG LKNLWTFRYC FWKCSRSYVF TGAWNKFVKA 120 YELQAGDSVL FYKNYSGDES FFGIEVRYAG ARNLVGSVTK NLNNVEEFMN DDTVRVKEEH 180 EVSASQLKEK DVMLFGVRIK RASKDFQGKN LIIM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	1e-21	40	142	11	111	DNA-binding protein RAV1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ149221	1e-41	FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233805.1	1e-155	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBL	A0A166FFT5	1e-158	A0A166FFT5_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-25	RAV family protein

Link Out ? help Back to Top
Phytozome	DCAR_008571