PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008573
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 251aa    MW: 29165.2 Da    PI: 7.4544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008573genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-2344142190
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 
                  f+kvl +sdv++++rl++pkkfa ++         ++ + + + ++d + + W+++++++k+s++yv+t+ W++Fvka +L++gD+v+F+  ++g+++
  DCAR_008573  44 FKKVLAKSDVGRLSRLIIPKKFAIQNfptidvdAPIEDCVFHIDFYDGRKNLWTFRYCFWKCSRSYVFTGAWNKFVKAYELQAGDSVLFYknYSGDES 141
                  89****************************99866677999*************************************************55555433 PP

                  E CS
           B3  90 f 90 
                  f
  DCAR_008573 142 F 142
                  3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-2937140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2542135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-2342148No hitNo description
PfamPF023628.5E-2144141IPR003340B3 DNA binding domain
SMARTSM010191.3E-1544146IPR003340B3 DNA binding domain
PROSITE profilePS5086311.89944151IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMCIYDTSLN SDARLSPPHK RQRLEKDAVI AIHDGEYHAR EFLFKKVLAK SDVGRLSRLI  60
IPKKFAIQNF PTIDVDAPIE DCVFHIDFYD GRKNLWTFRY CFWKCSRSYV FTGAWNKFVK  120
AYELQAGDSV LFYKNYSGDE SFFGIEVRYA GARNIVGSVT KNLNNAEEFM NDDILRVKEE  180
REVSASELKE KYFQLFGVRI KRASTDFQGG RSIDVIKKEE DYLVHKANCR RVKEEEEEFE  240
GLKVDLNLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-204114311111DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1492212e-40FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233805.11e-155PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A166FFW70.0A0A166FFW7_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-24RAV family protein