PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008574
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 250aa    MW: 29162.2 Da    PI: 7.8893
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008574genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.13.9e-2443141190
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 
                  f+kvl +sdv++++rl++pk+fa +h         ++ + + + ++d + + W+++++++k+s++yv+t+ W++Fvka +L++gD+v+F+  ++g+++
  DCAR_008574  43 FKKVLAKSDVGRLSRLIIPKRFAIQHfpsidvnARIEDCVFHIDFYDARKNLWTFRYCFWKCSRSYVFTGAWNKFVKAYELQAGDSVLFYknYSGDES 140
                  89****************************9997777899**************************************************55555433 PP

                  E CS
           B3  90 f 90 
                  f
  DCAR_008574 141 F 141
                  3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2836139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-2641134IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-2341147No hitNo description
PfamPF023627.4E-2143140IPR003340B3 DNA binding domain
PROSITE profilePS5086312.09743150IPR003340B3 DNA binding domain
SMARTSM010199.4E-1643145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MMCYDTSLNS DARLSPPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII  60
PKRFAIQHFP SIDVNARIED CVFHIDFYDA RKNLWTFRYC FWKCSRSYVF TGAWNKFVKA  120
YELQAGDSVL FYKNYSGDES FFGIEVRYAG ARNIVGSVTK NLNNAEEFMN DDILRVKEER  180
EVSASELKEK YFQLFGVRIK RASTDFQGGR SIDVIKKEED YLVHKADCRR VKEEEEEFEG  240
LKVDLNLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-224014211111DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1492212e-43FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233805.11e-160PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A166FFY10.0A0A166FFY1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.19e-24related to ABI3/VP1 1