PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008634
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 323aa    MW: 35734.4 Da    PI: 9.2154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008634genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1365109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      DCAR_008634  65 RETWTDQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 109
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-1659115IPR009057Homeodomain-like
PROSITE profilePS5129415.74460114IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-662117IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-1763112IPR006447Myb domain, plants
SMARTSM007174.3E-1164112IPR001005SANT/Myb domain
PfamPF002493.1E-1165109IPR001005SANT/Myb domain
CDDcd001672.35E-867110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVSFYPSPPS KDCQRVIKMG TFAGLDCLPF AQDDAAVADN SSMNYGSEDP NSKKIRKPYT  60
ITKSRETWTD QEHDKFIEAL HLFDRDWKKI EAFVGSKTVI QIRSHAQKYF QKVQKNGTSE  120
HVPPPRPKRK AAHPYPQKAP KNASQVTGGF QSSAAIPGSV ASPNSIAVAV PMIPISISAM  180
SSWNNNILPP FNAAGPNEVH NSSYSSNSND PKMWPTGETM NDRKVKQTIK VMPDFAQVYS  240
FLGSVFDSNA SGHMERLKMM DPINIETVLM LMKNLAVNLT SPEFENHRRL ISSYDPDTGN  300
SKTGSSFIDM HPNQHTDAIL SI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231199.10.0PREDICTED: protein REVEILLE 6
SwissprotQ8H0W32e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A166FHV20.0A0A166FHV2_DAUCS; Uncharacterized protein
STRINGEOX958711e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.28e-82MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]