PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008655
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 352aa    MW: 39159.4 Da    PI: 5.572
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008655genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27123183259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s++d ++v++tY+g+H+++
  DCAR_008655 123 ADGHSWRKYGQKDILGATFPRAYYRCTYRhsqGCLATKQVQKSDDDSSLVQVTYKGSHTCK 183
                  7**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.39117180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-27118184IPR003657WRKY domain
SuperFamilySSF1182901.44E-24120184IPR003657WRKY domain
SMARTSM007746.1E-39122184IPR003657WRKY domain
PfamPF031062.3E-25124183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEKGRAHINT ELKQGRELAN QLKQHFLETT QQSKQTCDAL LTDILSSYEK ALSILKSNAL  60
GFEHHSPVIS IINSPHSFTS DSSPASDISD EPSKNVFRKR KALPQWSEQV EVPLGTGAQV  120
PLADGHSWRK YGQKDILGAT FPRAYYRCTY RHSQGCLATK QVQKSDDDSS LVQVTYKGSH  180
TCKQGSESGA GLVVSFGKDE KRQKKGSYEP KPEEQTQEHE FENIISFGTS HKTKLGISMG  240
VERLPSFSFP CAIEESYTKD YLDAGENNFM GNTYSSYMTP ETSECSYLSL SPYHMNNFGI  300
AQNLQTSESD LTEILSAPNS VTNSPIGDYD FSLDPVDFDH NISLDILEFF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-191231801774Disease resistance protein RRS1
5w3x_D6e-191231801774Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231328.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A166FIF60.0A0A166FIF6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-43WRKY family protein