PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008701
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 242aa    MW: 27114.9 Da    PI: 7.7469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008701genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.3e-13156238179
                  EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 
                  f+k lt sdv  + +rlv+pkk+ae++      +  ++  + ++d++g++W +k++y+ +s++  yvl+ G +++ +a + ++gD+
  DCAR_008701 156 FEKMLTASDVDHKlARLVIPKKYAEAYfpvvTAP--QGGPVEFQDTDGKEWVFKFRYWPCSSSrtYVLE-GLRDYMSAMKGQVGDM 238
                  899******99877**************976433..4446*****************777766658888.*********9999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-20151237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-16153237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-16154238No hitNo description
PfamPF023624.0E-10156238IPR003340B3 DNA binding domain
SMARTSM010190.0034156241IPR003340B3 DNA binding domain
PROSITE profilePS508638.783157241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MATSSSSKTS CFQCEDSISD SFKHGWRLRS GDVARLCNRC GSVYEDGRFC ETFHSNDDGW  60
RDCESCGKLV HCGCVVSYNA YLLLDFGGVI CMDCSKRNFI TARNRCLSLE SQAGTANLSI  120
DFGKKIHVEP CNLPWVNNTE LQQISRKPRS IITPLFEKML TASDVDHKLA RLVIPKKYAE  180
AYFPVVTAPQ GGPVEFQDTD GKEWVFKFRY WPCSSSRTYV LEGLRDYMSA MKGQVGDMGK  240
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-271342372104B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238618.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBLA0A165ZET60.0A0A165ZET6_DAUCS; Uncharacterized protein
STRINGMigut.H01903.1.p1e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.13e-30VP1/ABI3-like 3