PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008891
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 359aa    MW: 40315.1 Da    PI: 5.5819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008891genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-17223273255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ GVr+++ +g+++AeIrd + ng   r++lg+f t+e+Aa  +++a+++++g
  DCAR_008891 223 HFIGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFNTEEQAALVYDQAALSMRG 273
                  689******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.27E-26222281No hitNo description
PfamPF008471.4E-11223273IPR001471AP2/ERF domain
SMARTSM003806.6E-33223287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-27223282IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-20223282IPR016177DNA-binding domain
PROSITE profilePS5103221.048223281IPR001471AP2/ERF domain
PRINTSPR003672.4E-7224235IPR001471AP2/ERF domain
PRINTSPR003672.4E-7247263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSFLTDQYTT PPLQAPVPSF GSPSYVFGAP AFPVTPAGVR STPTPVHMHS FGAYAAESSP  60
WAVRDQSEPE GPSEPEQRQQ LKVLYYWLKI HVFLPDFAEV YNFIGSVFDP NTKGHVQKLK  120
EMDPIDVETV LLLMRNLSVN LTSPNFEDHR KLLSSYQIDL EKENTDEMVN NLLDDEADHN  180
AQFEWQHRSI SDPFDKIHTS PHEEDLVSKT NDEQAPEIRK KKHFIGVRRR PWGKFAAEIR  240
DSTRNGVRVW LGTFNTEEQA ALVYDQAALS MRGSLAQLNF PTETVRDSLR DDNYFCSNGS  300
SPAAALKEKH KMRSIAKSSR NKSSSVSGKN MVVLQDLGPD LLEELLGVSD TSSPCSYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25220281263ATERF1
3gcc_A2e-25220281263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239261.11e-138PREDICTED: uncharacterized protein LOC108212042
TrEMBLA0A165ZK500.0A0A165ZK50_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-38ethylene response factor 1