PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008893
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 336aa    MW: 37520.1 Da    PI: 8.4396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008893genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-1257101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      DCAR_008893  57 RESWSEPEHDKFLEALTLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 101
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.41E-1551107IPR009057Homeodomain-like
PROSITE profilePS5129413.26552106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-555107IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-1755104IPR006447Myb domain, plants
SMARTSM007179.9E-956104IPR001005SANT/Myb domain
PfamPF002498.2E-957101IPR001005SANT/Myb domain
CDDcd001671.16E-659102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVSLNSNPPE NFYLDPQMGL PLQNIGSFSA PPGAPDPALS DDLSIKIRKP YTITKSRESW  60
SEPEHDKFLE ALTLFDRDWK KIEAFIGSKT VIQIRSHAQK YFLKVQKSGT NEHLPPPRPK  120
RKAAHPYPQK APKNAPVLSQ VNASFQTSPL PETGFMRRSN SSPLLRIPTA STAAVRSQTE  180
NSTQTFDLSN MTKGDIRSAR QPMANNCSSS SESTPKTQQT GESTDQRNHG SSSLRVLPDF  240
AEVYGFIGSV FDPNTKGHVQ KLKEMDPIDV ETVLLLMRNL SVNLTSPKFE DHRKLLSSYQ  300
IDLEKENTDD MVNNLLDDKA DHNAQFEWQH RSISG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242755.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-107RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A165ZK680.0A0A165ZK68_DAUCS; Uncharacterized protein
STRINGcassava4.1_012341m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.15e-96MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]