PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008959

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 310aa MW: 33698.6 Da PI: 8.4748

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008959	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	42	102	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 a++cprC+s++tkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss DCAR_008959 42 PPAINCPRCHSAHTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 102 56899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	35	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.621	45	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDGTNNSDGA NSDHQTLQQT RPFTTENNIQ NKAVSAPRPQ KPPAINCPRC HSAHTKFCYY 60 NNYSLSQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSSSSLSSS LSKKLPDTIN 120 SYQNPNLKIF HESQDLNLAY PPNQFVEFTN SPTSYTNFSQ FFKSGNNISG GRGFSSFMSV 180 IPGSDSHSSG LLYSSPVPGS GLPFQEFSKT SGLNFSTNQH QLGFDNSENQ GGFGSALQAV 240 HQENNSSSTN HAKLLNFPIE DLKQPAVVTN TGSTNESEHN GGTHHRENDH LQSSGLIWNN 300 GDLGGGASW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017237232.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like
TrEMBL	A0A165ZMB5	0.0	A0A165ZMB5_DAUCS; Uncharacterized protein
STRING	EOY23618	7e-53	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	4e-30	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_008959