PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009053
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 281aa    MW: 31647.2 Da    PI: 7.1469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009053genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-192978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  DCAR_009053 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAVAYDEAARRLYG 78
                 69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-302888No hitNo description
SMARTSM003802.1E-352992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6422986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-302987IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-212987IPR016177DNA-binding domain
PfamPF008472.7E-122978IPR001471AP2/ERF domain
PRINTSPR003673.5E-103041IPR001471AP2/ERF domain
PRINTSPR003673.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENNRKVSLK PWKKGPTRGK GGPQNATCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAVAYD EAARRLYGPD AYLNLPHLRT NFNPLNKSHK FKWFPSNNNI TLFPASGLLN  120
LNAQPSVHVI HQRLQELKKS GVLSQSSSSS SSSSDPKNDA AFINSQRPCL IRYYAEPLSK  180
ITSGDHPEKP QLDLNEFLQQ LGIIKRDDHV DTGEASSSLT ELETSLIDDN GVAEFANTSF  240
NWDMLGELQD IEDRRGAESN SWQAYDISEE LSFTTSIWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-173091667ATERF1
3gcc_A3e-173091667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241114.10.0PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX51e-85DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A165ZQC90.0A0A165ZQC9_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g08150.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-74ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]