PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009054
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 676aa    MW: 75649 Da    PI: 7.1305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009054genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07613668147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      + +W+  E+e l+++v+++ ++      Wk+I +       k+Rt+ ++k++w++ 
      DCAR_009054 613 KVPWSDAEEEALKEGVRRFASDnnrtmPWKRILEFGAqifeKHRTAIDLKDKWRNM 668
                      579*****************************987669999*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.6E-9306367IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.51E-9314368IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.627320369IPR019787Zinc finger, PHD-finger
SMARTSM002497.9E-8322367IPR001965Zinc finger, PHD-type
PROSITE patternPS013590323366IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.9E-9608670IPR009057Homeodomain-like
PROSITE profilePS500907.062608669IPR017877Myb-like domain
SuperFamilySSF466892.04E-9610670IPR009057Homeodomain-like
SMARTSM007170.01612671IPR001005SANT/Myb domain
CDDcd116607.21E-15614670No hitNo description
PfamPF139214.7E-5616672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MTSSPNASSW LPWIWALETL AYNHADSSLL IDLMKLIPDN VVDNGGNVAK ESAFLRILEG  60
FPGSRKGECC GDSLKLDSNA GGFGSLKLLR KECSGRNHEL SESEMLRLDV DTGLPKCTLR  120
KLKDMILKDS HLLPSYLKER SGLLKCSDGV TKRLPEGSNC DAAENPKVRD LSSGKRGIND  180
LTTANEGMVS ACRELIVYNA YPDVKAATKR KWDTFCTQQV IEGNDSASFH ENRHVEDTSG  240
GIVLYSGRDG SNLDSEPWAK SFHGDMPSEN VDDNHRREIL SSDDIDHDEN DDSIAREDIL  300
LETQNSDSQD SLANVNGTKE QLCMMCKLGD QLLVCSSGSC QRVVHERCLG FAPTFDAKRR  360
FYCPFCAYFR AVSEYSDSKK QYALTKNALL SFKNRLRNSD ISGRGDRNHV RDSEVSDKCT  420
EQNNLENVVS RVNQVQSMMR MREKSSVSCD LSSRVGERDV TCGGNMADKQ NAETIGSSVY  480
CQSTKEQVQK VPELDVQNCK AYNSLHGGSK QLAVVEKLQK VLQQPNGVIL VTNNEEQKIA  540
LRAVKDSKVP DSDKYLKISH RNDPRTGADR EQDVSNQPHV LPRELAKPLR SLGVQKQEQH  600
IPYPSVPQYR RKKVPWSDAE EEALKEGVRR FASDNNRTMP WKRILEFGAQ IFEKHRTAID  660
LKDKWRNMCK ASPVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238175.10.0PREDICTED: uncharacterized protein LOC108211162
TrEMBLA0A165ZQD90.0A0A165ZQD9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-07MYB_related family protein