PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009107

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 380aa MW: 41716.3 Da PI: 9.8111

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009107	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.2	5.8e-16	255	297	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv+ Le+eN++Lk DCAR_009107 255 RRQKRMIKNRESAARSRARKQAYTNELENKVQRLEEENEMLKT 297 79***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-14	247	298	No hit	No description
SMART	SM00338	6.4E-14	251	317	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	253	298	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.46E-23	255	299	No hit	No description
Pfam	PF00170	7.5E-14	255	297	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-12	255	299	No hit	No description
PROSITE pattern	PS00036	0	258	273	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MGSQGGYSGG AGRGTREPKL DSLVRQNSLY NLTLDEVQNH MGNLGKPLSS MNLDEFLKNV 60 SSVESNQGLG RGEYGVQNRQ LASVSSLSRK PSLSLSRDLS KKTVDEVWKD IQQGQKRPGI 120 GMNSRERNST LGEMTLEEFL VKAGVISEGE KALGSVVGVN PVSLPQQSVS LPAAWMNYQI 180 PPTHQPTQQQ IMPILFMPSN SVQPQLSLSS DPILDSYGET QMTSPSPLLG TLLDAQSQGR 240 KRIASEDVVE KTVERRQKRM IKNRESAARS RARKQAYTNE LENKVQRLEE ENEMLKTQKG 300 SGSCSQPALC AWLPVAAFTG TSLDCRNLWY MDTGVSFYMN AHPGGRKTVA ICTVSRAKVS 360 TSQDQLSIFL KKYRLKDGV*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MGSQGGYSGG AGRGTREPKL DSLVRQNSLY NLTLDEVQNH MGNLGKPLSS MNLDEFLKNV  60
SSVESNQGLG RGEYGVQNRQ LASVSSLSRK PSLSLSRDLS KKTVDEVWKD IQQGQKRPGI  120
GMNSRERNST LGEMTLEEFL VKAGVISEGE KALGSVVGVN PVSLPQQSVS LPAAWMNYQI  180
PPTHQPTQQQ IMPILFMPSN SVQPQLSLSS DPILDSYGET QMTSPSPLLG TLLDAQSQGR  240
KRIASEDVVE KTVERRQKRM IKNRESAARS RARKQAYTNE LENKVQRLEE ENEMLKTQKG  300
SGSCSQPALC AWLPVAAFTG TSLDCRNLWY MDTGVSFYMN AHPGGRKTVA ICTVSRAKVS  360
TSQDQLSIFL KKYRLKDGV*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU433293	5e-33	EU433293.1 Daucus carota isolate WD966406 ABA response element-binding factor 2 (AREB2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017237368.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	4e-74	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A162AFI1	0.0	A0A162AFI1_DAUCS; Uncharacterized protein
STRING	Solyc10g081350.1.1	1e-107	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-63	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	DCAR_009107

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]