PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009129
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 250aa    MW: 29114.1 Da    PI: 7.8892
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009129genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.56.9e-2543141190
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 
                  f+kvl +sdv++++rl++pk+fa +h         ++ + + + ++d + + W+++++++k+s++yv+t+GW++Fvka +L++gD v+F+  ++g+++
  DCAR_009129  43 FKKVLAKSDVGRLSRLIIPKRFAIQHfpsidvnARIEDCVFHIDFYDARKNLWTFRYCFWKCSRSYVFTGGWNKFVKAYKLQAGDNVLFYknYSGDES 140
                  89****************************9997777899**************************************************55555433 PP

                  E CS
           B3  90 f 90 
                  f
  DCAR_009129 141 F 141
                  3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-3036140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2741134IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-2441147No hitNo description
SMARTSM010191.5E-1743145IPR003340B3 DNA binding domain
PROSITE profilePS5086312.42143150IPR003340B3 DNA binding domain
PfamPF023621.8E-2143140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MMCYDTSLNS DARLSPPHKR KRLEKDVVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII  60
PKRFAIQHFP SIDVNARIED CVFHIDFYDA RKNLWTFRYC FWKCSRSYVF TGGWNKFVKA  120
YKLQAGDNVL FYKNYSGDES FFGIEVRYAG ARNVVGSLAN NLYNGEELMN DDTVRVKEEH  180
EVSASQLKEK DVMLFGVRIK RASKDFQGGR SNDVIKEEED YSVRRADCWR VKEEEEEFEG  240
LKLDLNLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-224014211111DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1492212e-43FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239308.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A165ZSM10.0A0A165ZSM1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-25RAV family protein