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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | DCAR_009129 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family | B3 | ||||||||
| Protein Properties | Length: 250aa MW: 29114.1 Da PI: 7.8892 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 78.5 | 6.9e-25 | 43 | 141 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89
f+kvl +sdv++++rl++pk+fa +h ++ + + + ++d + + W+++++++k+s++yv+t+GW++Fvka +L++gD v+F+ ++g+++
DCAR_009129 43 FKKVLAKSDVGRLSRLIIPKRFAIQHfpsidvnARIEDCVFHIDFYDARKNLWTFRYCFWKCSRSYVFTGGWNKFVKAYKLQAGDNVLFYknYSGDES 140
89****************************9997777899**************************************************55555433 PP
E CS
B3 90 f 90
f
DCAR_009129 141 F 141
3 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 3.8E-30 | 36 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 7.46E-27 | 41 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.53E-24 | 41 | 147 | No hit | No description |
| SMART | SM01019 | 1.5E-17 | 43 | 145 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.421 | 43 | 150 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.8E-21 | 43 | 140 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 250 aa Download sequence Send to blast |
MMCYDTSLNS DARLSPPHKR KRLEKDVVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII 60 PKRFAIQHFP SIDVNARIED CVFHIDFYDA RKNLWTFRYC FWKCSRSYVF TGGWNKFVKA 120 YKLQAGDNVL FYKNYSGDES FFGIEVRYAG ARNVVGSLAN NLYNGEELMN DDTVRVKEEH 180 EVSASQLKEK DVMLFGVRIK RASKDFQGGR SNDVIKEEED YSVRRADCWR VKEEEEEFEG 240 LKLDLNLSL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wid_A | 1e-22 | 40 | 142 | 11 | 111 | DNA-binding protein RAV1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FJ149221 | 2e-43 | FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017239308.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
| TrEMBL | A0A165ZSM1 | 0.0 | A0A165ZSM1_DAUCS; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50680.1 | 1e-25 | RAV family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | DCAR_009129 |




