PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009288

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 210aa MW: 22494 Da PI: 7.5774

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009288	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	144.2	3.1e-45	27	121	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vr+qd +lPian+srim+k++P+n+ki+k++ke +qecv++fis++t+easdkc+++krkti+gdd+lwa++ Gf++y+ pl++y++k+r e+ DCAR_009288 27 VRDQDMLLPIANISRIMRKAVPQNGKIAKESKERIQECVTDFISYITGEASDKCREDKRKTISGDDVLWAMSRAGFQNYIGPLTLYMHKFRAGEK 121 589****************************************************************************************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.1E-45	24	129	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-34	30	124	IPR009072	Histone-fold
Pfam	PF00808	1.1E-23	33	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.5E-12	61	79	No hit	No description
PRINTS	PR00615	4.5E-12	80	98	No hit	No description
PRINTS	PR00615	4.5E-12	99	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MESIVENAAV SPGRGSSENG NRSFESVRDQ DMLLPIANIS RIMRKAVPQN GKIAKESKER 60 IQECVTDFIS YITGEASDKC REDKRKTISG DDVLWAMSRA GFQNYIGPLT LYMHKFRAGE 120 KRAATKGGRG SANMNGGVGG SGIGNGDNGL AQQISHSQVV IDANSQILFP SQAVNDANSQ 180 GLFPSHGVND VNSQAHGEFV TAFMQGRQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-40	26	117	1	92	NF-YB
4awl_B	1e-40	26	117	2	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-40	26	117	2	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239353.1	1e-154	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	Q75IZ7	5e-45	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A165ZXV6	1e-153	A0A165ZXV6_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	7e-46	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	DCAR_009288

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]