PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009402
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 214aa    MW: 24070.9 Da    PI: 4.4878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009402genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.9e-1749100156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + y+G+r++  +g+Wv+e+r+p +   + r++lg++ tae+Aa+a + a+ +l+ge
  DCAR_009402  49 PVYRGIRRRD-SGKWVCEVREPIK---NSRIWLGTYPTAEMAARANDVAAIALRGE 100
                  68*****999.7******999743...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1249100IPR001471AP2/ERF domain
SMARTSM003801.8E-2750113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2950109IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2050109IPR016177DNA-binding domain
PROSITE profilePS5103221.78650107IPR001471AP2/ERF domain
PRINTSPR003671.1E-85162IPR001471AP2/ERF domain
CDDcd000181.48E-2951109No hitNo description
PRINTSPR003671.1E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDQLSSKHDS EGKGKSIDSE GHNSYEVLLA SRNPKKRSGR IKFKETRHPV YRGIRRRDSG  60
KWVCEVREPI KNSRIWLGTY PTAEMAARAN DVAAIALRGE TACLNFEDSV WRLPLPESSD  120
VKDIQIAAAK AAEAFRPPEN EMMSGENTSL VVKEDDEMFD MDEDAIFRMP QLINNMAEGM  180
LISPPQYVQS DGCDELDDDM EDATDLSLWS YSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14481061271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240549.11e-158PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ931e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A166A2431e-157A0A166A243_DAUCS; Uncharacterized protein
STRINGSolyc03g026270.1.15e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-55dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]