PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009452
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 303aa    MW: 34991.7 Da    PI: 7.0892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009452genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-067799123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C +C+ sF+r  nL+ H  tH
  DCAR_009452 77 FPCDICDSSFPRMQNLRFHYTTH 99
                 89******************999 PP
2zf-C2H211.30.0011155176223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  C + +  ks+L  H++++
  DCAR_009452 155 TCDQCLQKYALKSDLDAHQKKC 176
                  7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0297799IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.76477104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035549119149IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.28E-6151191No hitNo description
SMARTSM00355200154174IPR015880Zinc finger, C2H2-like
SMARTSM00355100181201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKFWFMFIMI LIVGTEDEII NDIYVEEIPV IQNRHLTESE GSNPSASKIK KRKWGNPDPS  60
AEVVALSPAQ LQDFEKFPCD ICDSSFPRMQ NLRFHYTTHN VHHKLPQKNA SGEPRKKVYT  120
CPDLNCVHHN PTRALCNIGA IKKHYNRKHT EKSLTCDQCL QKYALKSDLD AHQKKCGTKN  180
YECNLCGSKY SRIDRFEIHK VKCRSEGPMP NEIMQISREK VSEVKDVPVP ESSVSFGPSS  240
PLSTNYIAQE FERCERFEIP EFNTLEQLQS RIQMSDSSQQ HALDVDSYQE KSIWDLNYWD  300
VI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239385.11e-174PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-46IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A166A3E80.0A0A166A3E8_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.17e-49indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]