PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009459
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 412aa    MW: 43628.5 Da    PI: 9.4266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009459genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.9e-12120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++ +  +lG+g+Wk I++    +Rt+ q+ s+ qky
      DCAR_009459 120 PWTQSEHRAFLLGLSKLGKGDWKGISKNYVPTRTPTQVASHAQKY 164
                      8**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR009025.8E-67599IPR001399VP6 blue-tongue virus inner capsid protein
PROSITE profilePS5129416.11113169IPR017930Myb domain
SuperFamilySSF466893.51E-16114169IPR009057Homeodomain-like
SMARTSM007173.5E-10117167IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.3E-15117167IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.5E-10117163IPR009057Homeodomain-like
PfamPF002495.4E-10120164IPR001005SANT/Myb domain
CDDcd001671.98E-9120165No hitNo description
PRINTSPR009025.8E-6196218IPR001399VP6 blue-tongue virus inner capsid protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019028Cellular Componentviral capsid
GO:0003677Molecular FunctionDNA binding
GO:0005198Molecular Functionstructural molecule activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MARGDDGSGK EGGGFKLFGV EINFGHELNK KSGDESGKVQ KKRGHDDDEG GESDRLRKSK  60
SVGNLHEMGN HSGGEGDADA NGGDGAVGGG GGADDSGYHS DGVLHVNSRR AAHMRRKGTP  120
WTQSEHRAFL LGLSKLGKGD WKGISKNYVP TRTPTQVASH AQKYFIRMTT AEKKNRRASL  180
FDIPFNESNL PPHTPAAPFT ASENSQQVIS SAVAPPRRTT DIHGLEWSSA HTAASEKKPP  240
LAPMSRNFVQ DTGHMSYMSA VPGRSFPAAP VMPQAELYPM MNHTITQYQN YYYVPSSHGN  300
FPAPIMNQKS NGVFLQPYPP VLVTSQALPA TPAGGSFASS ASLPNYYQPV TGPPTSFAAC  360
APFPNQYPTA NGPGTSFAAC APYPTANGPA TSTVTKRDAL EAGIGTLSLK I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238395.10.0PREDICTED: uncharacterized protein LOC108211336
TrEMBLA0A166A3L50.0A0A166A3L5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-33MYB_related family protein