PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009541

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 172aa MW: 19104.3 Da PI: 5.207

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009541	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6.1e-40	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+ dC+++pyfp ++p++fa vh++FGasnv k+l++lp + r +a+++l+yeA++r+++Pv+G+vg+i++l+++++++++ela+++ DCAR_009541 5 RCAACKYLRRRCPVDCIFSPYFPPTNPHRFASVHRIFGASNVGKMLQQLPVHLRGEAAETLYYEAQCRIENPVHGCVGIITQLHEEINNAEQELARAQ 102 6***********************************************************************************************99 PP DUF260 99 eel 101 ++l DCAR_009541 103 AQL 105 885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.086	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-40	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MNTGRCAACK YLRRRCPVDC IFSPYFPPTN PHRFASVHRI FGASNVGKML QQLPVHLRGE 60 AAETLYYEAQ CRIENPVHGC VGIITQLHEE INNAEQELAR AQAQLAVHQP HHHHHQQEIE 120 EAVTGEGAEP MVPGDHAQEV AAEVAGNVED SDQNEFDIAA LMSPSDPDWF Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239398.1	1e-126	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	2e-49	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A166A674	1e-125	A0A166A674_DAUCS; Uncharacterized protein
STRING	evm.model.supercontig_1.339	1e-55	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	4e-45	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	DCAR_009541