PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009550
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 239aa    MW: 27436.5 Da    PI: 4.3472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009550genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12175218654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  DCAR_009550 175 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 218
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15172231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9175218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-5182222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLEMEYNGHD FLEELLTFRS EPWESITNLI PTQPHEFYNF TNAYCNVPTL PETPLSNIPQ  60
TYCFEDLPAL PFDQYQPSFN FSSYFGEFCV PFGDDQAISA PEHTDSSNNM LDTPDPFLPC  120
QEEYSVIEDF EVQAAAEACK MEPFQSPEVP GFNMGAGMEK RSKVKKLDGQ PSKNLMAERR  180
RRKRLNDRLS MLRSVVPKIS KMDRTSILGD TIDYMKELLE RINKMQEGNE SDSNDHHX*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165KRSKVKK
2177184ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238349.11e-178PREDICTED: transcription factor bHLH93-like
TrEMBLA0A166A6H41e-177A0A166A6H4_DAUCS; Uncharacterized protein
STRINGEOY155582e-60(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.22e-30beta HLH protein 93