PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009610

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WRKY

Protein Properties

Length: 204aa MW: 23248.9 Da PI: 6.8479

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009610	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	130	188	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++pr+YY+C+s gC+vkk+ver+ +d ++v++tYeg Hnhe DCAR_009610 130 LDDGYKWRKYGKKMVKNNPNPRNYYKCSSVGCKVKKRVERDLKDSSFVITTYEGIHNHE 188 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.4E-32	118	190	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	123	190	IPR003657	WRKY domain
PROSITE profile	PS50811	30.641	125	190	IPR003657	WRKY domain
SMART	SM00774	7.0E-35	130	189	IPR003657	WRKY domain
Pfam	PF03106	1.2E-23	131	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSTSLAPPII QPPASNPNPT FTNSLTYTIC DDLGFEFLDY LSFGDHHQLE DHDYTCNFIT 60 SAHVAQAPLI LQENNTSAES SLNSNHDDMD IGHHVLPTNK CSKRMKRSDK SDENGGSRIA 120 FRIKTELETL DDGYKWRKYG KKMVKNNPNP RNYYKCSSVG CKVKKRVERD LKDSSFVITT 180 YEGIHNHETP HAFVYYNTQM QYD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	120	190	7	77	Probable WRKY transcription factor 4
2lex_A	5e-25	120	190	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238966.1	1e-153	PREDICTED: probable WRKY transcription factor 50 isoform X1
Swissprot	Q93WU9	1e-35	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A166A821	1e-152	A0A166A821_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-38	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	DCAR_009610

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]