PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009695
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GeBP
Protein Properties Length: 402aa    MW: 44339.6 Da    PI: 4.5728
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009695genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.72.4e-35172263397
       DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  ++rlwse+Deiv+LqGlid++  ++ +p++d++afy+fvk+s+++ vs +ql++KirrLKkK+  + +k   g++++f k+h++k+felskkiWg
  DCAR_009695 172 IHRLWSEDDEIVILQGLIDYQLANDEDPYSDLEAFYKFVKDSLHVSVSMKQLSDKIRRLKKKYSVNAEK---GDDVVFVKPHEDKSFELSKKIWG 263
                  57******************************************************************9...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.7E-31173263IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MARKRSSPPP ENPADDSDHV DAASDDDEQP IESDPQNDVA EEQNDGEQES QEEDDAESEG  60
EGEDEAPADA NDQSGEKQVS SQGSESIGKE SGSDPDQGSG SESEKSSPSP VPVKPIRSKP  120
MKVLAKKPDP KSDPKPKRKR ASVKRGGEAE KSGKGGNKRA RVSNGDEKRS GIHRLWSEDD  180
EIVILQGLID YQLANDEDPY SDLEAFYKFV KDSLHVSVSM KQLSDKIRRL KKKYSVNAEK  240
GDDVVFVKPH EDKSFELSKK IWGGGNGAEE GGKGKSGRKK KDKDVGKTVN NGVKVNGKDD  300
VAVEDDIENG VEADEEDEEG LDFKGMYPYM SKAWESDFSC SQPLKEISMG NFRLVSSEKM  360
RGMEKEWKDT YVKEMQFYVN KLDLKSKHAK VVLDQMINSD P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125138KKPDPKSDPKPKRK
2277282RKKKDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242416.10.0PREDICTED: mediator-associated protein 1
RefseqXP_017242417.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A162AHE50.0A0A162AHE5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-22DNA-binding storekeeper protein-related transcriptional regulator