PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009768
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 304aa    MW: 34082.5 Da    PI: 6.3714
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009768genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.72.5e-3519124189
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasn 84 
                  a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++              ++      ++++ s ++++
  DCAR_009768  19 ATGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLMNKAKNAIDKLEELppwnpmdtttvlnaGQ------NPNELSLQQHQ 110
                  589**************************************************************7766555444333222......33344444444 PP

          TCP  85 sssg.........k 89 
                  +s++          
  DCAR_009768 111 QSQHylfqdqlddG 124
                  44334455455552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3220127IPR005333Transcription factor, TCP
PROSITE profilePS5136932.1352280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKSNAGEIVQ VEGGHILRAT GRKDRHSKVY TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD  60
RPSKAVDWLM NKAKNAIDKL EELPPWNPMD TTTVLNAGQN PNELSLQQHQ QSQHYLFQDQ  120
LDDGPINDTM KSFFPTSSGM NYQNYPSGSV QNNPQDLCLS LQSLQDLNRS VHSTPTPAND  180
HPSLYNPGPS EANFQRMVSW DAEMKPAEGY SFYPHTMPQP QMISVNSTPF TQRESLQSSF  240
SPYVRAWNDL PFPVSDHNNT QANDHFSMSS ASSQFGSRKI SSFQVPARIH GEDHEDPSSA  300
SDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-202780154Putative transcription factor PCF6
5zkt_B1e-202780154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238559.10.0PREDICTED: transcription factor TCP4-like isoform X1
TrEMBLA0A166ABV70.0A0A166ABV7_DAUCS; Uncharacterized protein
STRINGXP_002525139.11e-87(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.16e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3