PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009838

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 176aa MW: 18475 Da PI: 9.1566

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009838	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.8	4e-30	20	145	5	105
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 +++ ++Tkv+gR+ R+R++ +ca r+F+L++eLG+ +d+ ti+WLl+qa+pai+ +tgt++ +a ++ + s + + ++g DCAR_009838 20 PAPKKERYTKVEGRGSRIRMPTLCATRVFQLTKELGLATDGATIQWLLEQAEPAIIRATGTGTVPAIATvtA--DGSLRVPETKEGaaedvsktsgla 115 67899********************************************************88888666332..333333322222234555555566 PP TCP 89 .............kaaksaakskksqksaa 105 aa++ +k +++q+s + DCAR_009838 116 avgpspvsvpgygMAAENGMKMNQNQASVS 145 667666666665433333334444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-23	22	99	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.429	23	77	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MSSQKDFKGD SQVSGGPSQP APKKERYTKV EGRGSRIRMP TLCATRVFQL TKELGLATDG 60 ATIQWLLEQA EPAIIRATGT GTVPAIATVT ADGSLRVPET KEGAAEDVSK TSGLAAVGPS 120 PVSVPGYGMA AENGMKMNQN QASVSCEARV SSAAEDEYDE VVLMGKKIRF RKRGL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239441.1	1e-125	PREDICTED: transcription factor PCF2-like
TrEMBL	A0A166ADD4	1e-124	A0A166ADD4_DAUCS; Uncharacterized protein
STRING	Bo4g024860.1	2e-31	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	9e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_009838