PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009852
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 179aa    MW: 20319 Da    PI: 6.7423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009852genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.61.4e-28121432128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLp.kkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdke 91 
                   pGf+FhPt  el+v+yL+ kv g + +   + ++vd+y+ v P++L+  ++ ++++ +yfFs+ +kk+ +gk+ +r+      t+ gyWka+ k  e
  DCAR_009852  12 KPGFHFHPTALELIVHYLQTKVLGVSYHQGIINEHVDLYRdVTPEQLKgDAIIHRNEYMYFFSQVAKKHVNGKKCSRVvvddqgTSLGYWKASQKGAE 109
                  69************************9884445566*99736*****954555666788******************7789988889*********** PP

          NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +l ++g ++gl + Lvfy   + +g+kt W+m ey+l
  DCAR_009852 110 ILGANGVAIGLETRLVFY---TADGRKTAWLMIEYKL 143
                  ******************...678899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-319161IPR003441NAC domain
PROSITE profilePS5100531.46111163IPR003441NAC domain
PfamPF023659.7E-1813143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEQEAEHSAK VKPGFHFHPT ALELIVHYLQ TKVLGVSYHQ GIINEHVDLY RDVTPEQLKG  60
DAIIHRNEYM YFFSQVAKKH VNGKKCSRVV VDDQGTSLGY WKASQKGAEI LGANGVAIGL  120
ETRLVFYTAD GRKTAWLMIE YKLADNPYHK MDREWTICKV YEGGRTSHEE DAEGILEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-211116217164NO APICAL MERISTEM PROTEIN
1ut4_B5e-211116217164NO APICAL MERISTEM PROTEIN
1ut7_A5e-211116217164NO APICAL MERISTEM PROTEIN
1ut7_B5e-211116217164NO APICAL MERISTEM PROTEIN
3swm_A5e-21216211167NAC domain-containing protein 19
3swm_B5e-21216211167NAC domain-containing protein 19
3swm_C5e-21216211167NAC domain-containing protein 19
3swm_D5e-21216211167NAC domain-containing protein 19
3swp_A5e-21216211167NAC domain-containing protein 19
3swp_B5e-21216211167NAC domain-containing protein 19
3swp_C5e-21216211167NAC domain-containing protein 19
3swp_D5e-21216211167NAC domain-containing protein 19
4dul_A5e-211116217164NAC domain-containing protein 19
4dul_B5e-211116217164NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238947.11e-132PREDICTED: NAC domain-containing protein 100-like
TrEMBLA0A166ADS41e-131A0A166ADS4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-25NAC domain containing protein 46