PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009951

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 330aa MW: 37184.9 Da PI: 7.4978

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009951	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	203.3	7.1e-63	99	273	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 s +++C dCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaakrre+qqql+ +s++++++++++++++++++++++q+++++ + +++ + + DCAR_009951 99 SSSINCLDCGNQAKKDCVHMRCRTCCKSRGFPCQTHVKSTWVPAAKRREKQQQLHLSSEQQQQQQQQQQQQQQQQQQQQQQQQQQQEH--DQNQLSLM 194 56799**********************************************99988777776644444444443222222222222..11111122 PP DUF702 101 etss.........................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+ +Peevss+avfrcv v+++dd+e+++aYqtav+igGhvfkG+LydqG+e+ DCAR_009951 195 RASDsvkrpredplnctltshnsglevgqFPEEVSSTAVFRCVNVRAMDDAEKQYAYQTAVQIGGHVFKGLLYDQGPEH 273 2222344566889**************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-59	101	272	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.2E-27	104	145	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-25	223	271	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MSGLFSLGGK DQDQHQETNF YFFKNEEIYN KGFELWQQYY HLHQQQKSQL QDVDLSLVAA 60 SASNYSSTKR TITTTDGDQA LLYRSSSYGR NMMSGSSSSS SINCLDCGNQ AKKDCVHMRC 120 RTCCKSRGFP CQTHVKSTWV PAAKRREKQQ QLHLSSEQQQ QQQQQQQQQQ QQQQQQQQQQ 180 QQQQEHDQNQ LSLMRASDSV KRPREDPLNC TLTSHNSGLE VGQFPEEVSS TAVFRCVNVR 240 AMDDAEKQYA YQTAVQIGGH VFKGLLYDQG PEHRFGPGDT STGGAQQPLN LTTATTNSPG 300 VTWLDSSTTY PTPLNAFMAS TQFFPPPRP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240325.1	0.0	PREDICTED: protein SHORT INTERNODES-like
TrEMBL	A0A161XX59	0.0	A0A161XX59_DAUCS; Uncharacterized protein
STRING	VIT_18s0001g13420.t01	6e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	8e-63	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	DCAR_009951