PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010002

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 455aa MW: 50621.6 Da PI: 7.0859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010002	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.2	4.7e-06	342	381	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A+eYIk L DCAR_010002 342 KARKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381 66889999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.89E-7	325	386	No hit	No description
PROSITE profile	PS50888	13.027	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-12	333	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-10	333	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-4	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGDEEFQIGS GSWSQRSRSS RCSSPSSTST YAWPTQVGNV MKSPALLLNT NDSSNSVSAN 60 LFQDSHKQPL HQDNPNLHLM GLGLSTQPLD WNQHFRRGIE KSDENSSFRS MLQDDHDQLS 120 SNAPNFQQAE QPWPPRTQKM MMYSSSSAGT DSEGAFPSLN PSQLMSTGHH HHHHLNPNTI 180 DHHLDSSLSM QYHNSPSTTS MLPGLLGYEI NHQPQQQQQQ QQSAPFDTRS PMTNFNSFPT 240 SYGMNSSSTS DHDPQQLIMQ PNSWQAPNNK PQNQLHLSNN APFWNASAAA PIINHDVRSN 300 FFPSLQMQSA SSTFDEKPKK SSSSETSNKR PRNETPSAMP AKARKEKMGD RITALQQLVS 360 PFGKTDTASV LSEAIEYIKF LHEQVSVLSN AYMKSGAPIQ QQQQQKCDKS KDSEGQKQDL 420 RSRGLCLVPV SSTFPVTHET TVDFWNPTFG GTFR*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGDEEFQIGS GSWSQRSRSS RCSSPSSTST YAWPTQVGNV MKSPALLLNT NDSSNSVSAN  60
LFQDSHKQPL HQDNPNLHLM GLGLSTQPLD WNQHFRRGIE KSDENSSFRS MLQDDHDQLS  120
SNAPNFQQAE QPWPPRTQKM MMYSSSSAGT DSEGAFPSLN PSQLMSTGHH HHHHLNPNTI  180
DHHLDSSLSM QYHNSPSTTS MLPGLLGYEI NHQPQQQQQQ QQSAPFDTRS PMTNFNSFPT  240
SYGMNSSSTS DHDPQQLIMQ PNSWQAPNNK PQNQLHLSNN APFWNASAAA PIINHDVRSN  300
FFPSLQMQSA SSTFDEKPKK SSSSETSNKR PRNETPSAMP AKARKEKMGD RITALQQLVS  360
PFGKTDTASV LSEAIEYIKF LHEQVSVLSN AYMKSGAPIQ QQQQQKCDKS KDSEGQKQDL  420
RSRGLCLVPV SSTFPVTHET TVDFWNPTFG GTFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238145.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	4e-63	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A166AHA6	0.0	A0A166AHA6_DAUCS; Uncharacterized protein
STRING	XP_009355551.1	1e-104	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_010002

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]