PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010064
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 486aa    MW: 53688.3 Da    PI: 5.9699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010064genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-164387147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
      DCAR_010064 43 RERWTDEEHHKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 87
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.56E-163791IPR009057Homeodomain-like
PROSITE profilePS5129420.8413892IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-93994IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-164190IPR006447Myb domain, plants
SMARTSM007171.6E-114290IPR001005SANT/Myb domain
PfamPF002493.8E-134386IPR001005SANT/Myb domain
CDDcd001678.11E-94588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTSPDTLTAG LQSPADTQDK CQVVSSDDYA IKVRKQYTIT KQRERWTDEE HHKFLEALKL  60
YGRAWRRIEE HIGTKTAVQI RSHAQKFFSK VVRESSINEK NTVKPIEIPP PRPKKKPMHP  120
YPRKMVGRVE PGAHLSDELG RSASPSHSVS GRENRSPASV LSAVGSEATC VTDSNMQNCI  180
FSASSSDADD QTNSVFPSDT TPLPEENRSE NGSNSPIQAN DSSNEDEHVP TKLELFEADG  240
SFVKEESNDE VSTHSVKLFG KTVTVAESSL SSSRNNSCGS SHLESADERP VQTSPWNISQ  300
GMSYASPDAA EYTWTGVPCK APAVYYMQYA INNSINVDDE SSVPVPCWTF YGGVPYPFLQ  360
LRNSVQERVY MHFDGSNVQD KVLQKPGSLT GSNSGSINVE TDGDKTWEME TQCSQSLSEK  420
KDAEQKLTSP LKVRADAGFT EQKSILAKAN HGKGFVPYKR CLAERDNGTS ISGEEREERR  480
TRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237482.10.0PREDICTED: protein REVEILLE 1-like
TrEMBLA0A166AIN50.0A0A166AIN5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-46MYB_related family protein