PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010178
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 570aa    MW: 62971.6 Da    PI: 7.3581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010178genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.41.1e-17267316255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L ++veYI++Lq
  DCAR_010178 267 RSKHSATEQRRRSKINDRFQMLRGLIPHS----DQKRDKASFLLEVVEYIQYLQ 316
                  889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-23262333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-19263336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.348265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-15267320No hitNo description
PfamPF000103.3E-15267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MELPQPRPYG SAEGRKSTHD FLSLYSPGQQ ESRSSQGGFL KTHDFLQPLE RVETDQGISK  60
EGNKGEPPME NSRPPALPAT NSVEHILPGG IGTYSISHIS YLNQRVPKPE GVDTPPAQAS  120
SSNRNDDNSN CSSYTGSGFT LWDESVVMNK GQTGKENNFA AKERHAVREV GVHVGGQWAT  180
SLERPSQSSS SHSFLNKAFS SLSSSQQSFT KKQSFMDMIK SAKNGQEDEE EEDDEFVIKK  240
ELSPHNKGNI SIKVDGKGTD QKPNTPRSKH SATEQRRRSK INDRFQMLRG LIPHSDQKRD  300
KASFLLEVVE YIQYLQEKVQ KYEDPYHRWS QEPPKMMPWN NSHRTVETFD DQSGGPNCGS  360
GPPLMFATKF DEANTNISST MPRGGQGLSE YEISTADTVR EMGHHRVLAN GGMTLHVPPQ  420
QTMYSHKGSS SAAVTLPPRV ASNTEIRTSH PHPQLWQSKP STTESTTVRE KIKDQEMTIE  480
SGTISISSVY SKELLNSLTQ SLQSSGVDLS QASISVQIDI ANQAKRNLNP STPVVQSDDP  540
PNLTMLQSRL PSGRGESEQA FKRLKTGRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243146.10.0PREDICTED: transcription factor BIM1
TrEMBLA0A166AKX60.0A0A166AKX6_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g04790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.59e-87bHLH family protein