PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010346

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 210aa MW: 23425.2 Da PI: 4.1745

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010346	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	49.9	7.9e-16	24	113	7	94
NF-YB 7 flPianvsrimkkvlPanakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP + v r++k+ l +++ is ++a e e fi ++++ a+d c++ +r+tin++d++ al ++ f ++v pl++ l+ +r+ + DCAR_010346 24 ELPKSIVRRLVKEKLSEHGEISvlREAVEAFSESSRIFIHYLSAAANDICKESNRQTINAEDVFKALEDIEFSEFVGPLRASLEDFRQKN 113 689999************996679**********************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.5E-27	24	154	IPR009072	Histone-fold
Pfam	PF00808	5.5E-12	24	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.2E-22	25	142	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAEEITTAPE PKNVSEKDSG AVEELPKSIV RRLVKEKLSE HGEISVLREA VEAFSESSRI 60 FIHYLSAAAN DICKESNRQT INAEDVFKAL EDIEFSEFVG PLRASLEDFR QKNAVKRSGS 120 SKAKAPKKSK KETLTNNGTE EEQISNEGDE KSATERQMEN ETEEELNNDE ENEDGNENRT 180 TNGTKEEEDN NDEGNEDDIS APNDIEIRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y26_A	1e-11	12	109	8	100	DNA polymerase epsilon subunit D
5y27_A	1e-11	12	109	8	100	DNA polymerase epsilon subunit D
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238864.1	1e-147	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A166APF1	1e-145	A0A166APF1_DAUCS; Uncharacterized protein
STRING	Migut.D02442.1.p	6e-49	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-35	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	DCAR_010346