PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010463
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 257aa    MW: 28405.1 Da    PI: 8.7358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010463genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-1571117354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  Ave++k+L
  DCAR_010463  71 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSAVEHLKEL 117
                  79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1463123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82868117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1271117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1671120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1274123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-977120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENYYWAEAA ATEAWHFSQS RAAAVNEDLG STCSLQLPDD SNVYMHGYSH SQLPKSFQGG  60
EEDRSAASAS KSHSQAEKRR RDRINAQLAT LRKLIPKSDK MDKAALLGSA VEHLKELKRK  120
TMEVSQHIAI PSGIDEVSVT DCRPDQEASS STNAMFMRAS ICCENRPELF GEISQAIESL  180
RLKMIQADMS CLGGRIRSCF VVCTKDSKSL NGAGDANMIK QSLKVVLSRV VTSSTCSNYR  240
AKSKRQRFFF PSYISQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241856.10.0PREDICTED: transcription factor bHLH51-like isoform X2
TrEMBLA0A166ARZ20.0A0A166ARZ2_DAUCS; Uncharacterized protein
STRINGPOPTR_0008s07090.11e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-41bHLH family protein