PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010506
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 305aa    MW: 33194.3 Da    PI: 9.2783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010506genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.3e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I +         +R+  ++k++w++
      DCAR_010506  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQKDPEfnhhlYTRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.81161IPR017930Myb domain
SuperFamilySSF466891.65E-16258IPR009057Homeodomain-like
SMARTSM007172.7E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-15556IPR009057Homeodomain-like
PfamPF002498.4E-10555IPR001005SANT/Myb domain
CDDcd116601.25E-22656No hitNo description
SMARTSM005266.0E-14142207IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.2E-13144217IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.182144212IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.88E-14145224IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.8E-10147205IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQKDPEFNHH LYTRSNIDLK DKWRNMSVSA  60
GGQGPRDKSS RLIKPKSESD AADASYTAPT PLLLTNIHTP AASSTPPVTA SSTAPAPASS  120
ISPTHDALPA PANDASKCSL DVKTASKYDN MIYDALKNLN DPNGSDATAI VSFIEQKQEV  180
PQNFRRLLVS RLRRLVTQEK LEKVHNCYRT KNDAAPGAKG PTPKPKDIRP RQPQPTSYLP  240
DTVHDAAKNA AFKIAVADNK ESVAAEAGKE SDRINKMTED AEMLLKVAED IFDRCSRGEI  300
VMVS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237820.10.0PREDICTED: single myb histone 4-like
TrEMBLA0A166ASW30.0A0A166ASW3_DAUCS; Uncharacterized protein
STRINGXP_009757029.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-51MYB_related family protein