PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010609
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 174aa    MW: 19598.2 Da    PI: 9.9101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010609genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.2e-211969256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a+++ ++k++g+
  DCAR_010609 19 PYRGIRRRP-WGKWAAEIRDPKK---GARVWLGTFNTAEEAARAYDKKALKIRGA 69
                 59*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-231977IPR016177DNA-binding domain
SMARTSM003801.8E-371982IPR001471AP2/ERF domain
PROSITE profilePS5103224.6451976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-332077IPR001471AP2/ERF domain
PRINTSPR003673.4E-122031IPR001471AP2/ERF domain
PfamPF008477.6E-142068IPR001471AP2/ERF domain
CDDcd000182.10E-342077No hitNo description
PRINTSPR003673.4E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MINCGENPEH SVKRQRKNPY RGIRRRPWGK WAAEIRDPKK GARVWLGTFN TAEEAARAYD  60
KKALKIRGAK AKLNFPNKVN EALKIRGAKA KVNFLNKVGD SHVQLNTKKP SGSNSPSEFS  120
ADYTSLNSYE ACKKFCESPY FDEMVVGPAS IEPENVVEDD MLNLWSFDFD IVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-242080667ATERF1
3gcc_A1e-242080667ATERF1
5wx9_A5e-2420801576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11226KRQRKNPYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239692.11e-124PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A161WT751e-125A0A161WT75_DAUCS; Uncharacterized protein
STRINGXP_009608570.12e-37(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-35ERF family protein