PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010625

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 378aa MW: 41096.5 Da PI: 7.503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010625	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.2e-13	111	160	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR++iN+ ++ Lr+l+P+ + k+ + a+i+ + +YI++Lq DCAR_010625 111 ISHITVERNRRKQINDNLNVLRSLMPSF---YVKRGDQASIVGGVADYISELQ 160 5899*********************9...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.61E-11	106	164	No hit	No description
SuperFamily	SSF47459	1.96E-15	107	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.687	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-12	110	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-10	112	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-9	114	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MSTSVTSSPD FLQGSEFVDY ATSPDNFFSI LEALDGELMN TIEMAGQEEG GVRVEVENAT 60 APRLVSQNSA PCLISNDIDV KAPAEARNDL SSPKSNKRKL SSPAEEGQPK ISHITVERNR 120 RKQINDNLNV LRSLMPSFYV KRGDQASIVG GVADYISELQ QVLRSLEAKK QRKVYSDVVM 180 SPRLISSPRT KATTMSSLPI SPRKPPLSPR LISSLPASPR TPQSINNNNC SAFNNHLHRL 240 LVQQLHPSVN NFLLSPTNTM GSSSASLLLE PSPSSSNCST SSIIDNDQLV ANSKSRVADV 300 EVKFSGPNVI LSTVSPRIPG QALKIISALE HLSLEILSVT LNTTDQNTMI YSFTIKIGIE 360 CKLSAEELAQ QIQQTFY*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MSTSVTSSPD FLQGSEFVDY ATSPDNFFSI LEALDGELMN TIEMAGQEEG GVRVEVENAT  60
APRLVSQNSA PCLISNDIDV KAPAEARNDL SSPKSNKRKL SSPAEEGQPK ISHITVERNR  120
RKQINDNLNV LRSLMPSFYV KRGDQASIVG GVADYISELQ QVLRSLEAKK QRKVYSDVVM  180
SPRLISSPRT KATTMSSLPI SPRKPPLSPR LISSLPASPR TPQSINNNNC SAFNNHLHRL  240
LVQQLHPSVN NFLLSPTNTM GSSSASLLLE PSPSSSNCST SSIIDNDQLV ANSKSRVADV  300
EVKFSGPNVI LSTVSPRIPG QALKIISALE HLSLEILSVT LNTTDQNTMI YSFTIKIGIE  360
CKLSAEELAQ QIQQTFY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240823.1	0.0	PREDICTED: transcription factor SPEECHLESS
TrEMBL	A0A169WAI3	0.0	A0A169WAI3_DAUCS; Uncharacterized protein
STRING	GLYMA06G13081.2	1e-102	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7357	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	6e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_010625