PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010633
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 539aa    MW: 61535.6 Da    PI: 7.8435
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010633genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.4e-101782721499
                  T-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3  14 grlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  + +vl k+++++               g++  +s++ +  + + +sW vkl  + +sg  +++k W +F+ka +++ gD++vF+  ++ + ++++v v
  DCAR_010633 178 CDVVLRKRHLRKSeaynlfkkaeweslGII--QSMDYVKLTYKKKSWVVKL--KWHSGNLYMGKMWYNFAKAGNMCRGDTIVFQ--KTeKPQKYMVCV 269
                  555666666666666665544444433333..666777777889*******..889999*************************..44499999***9 PP

                  E-S CS
           B3  97 frk 99 
                  f+k
  DCAR_010633 270 FEK 272
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-540128IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.06645129IPR003340B3 DNA binding domain
SMARTSM010190.39177273IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-7207273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-6217271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.629220273IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-7291381IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.082293381IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-5293380IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.104306381IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-11443536IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-10445536IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.08446535IPR003340B3 DNA binding domain
PROSITE profilePS508637.401447538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MASSKVNSMA SSKNRINASI STIVETEGNL AMHRNDEIRF ICPNFSTDYI PGVLKLPREF  60
CVENSNRIPE RVLLHVPPRV VWKGLFKKDR FCIERLEKMM SCYCIKPYHV VLFEYDGGRN  120
FYLKFFNPYG VESSYHIEDR SHAGVEMDKK FLTTSDFEDE KLCGTLSFNS YESAKGICDV  180
VLRKRHLRKS EAYNLFKKAE WESLGIIQSM DYVKLTYKKK SWVVKLKWHS GNLYMGKMWY  240
NFAKAGNMCR GDTIVFQKTE KPQKYMVCVF EKKLFGKCNV AGVGQNNGIM DWFKIANLEF  300
IYTGEMEIPR VFSKIPGLRI PEDVNLVLKN GERFVAKYSS KENMLSGMKN MIRRYSIRAT  360
DVMIFSLTNS STFVVSLFKI SGMESKYIVA NEDGGEGGSN VEEEDIMVTA DDSGEGLEDV  420
PNENDPNNAE HGIVDAGGVA NELVSFRVVL KPSHVDKKQH GLYLPQNMYG TYKEWTASTI  480
IRLMCDGRIS FVSLLRSGRI CRFGKGWSEF TTDHNLLEGQ EIQLDYVDEL TFEVTIGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234535.10.0PREDICTED: uncharacterized protein LOC108208511 isoform X2
TrEMBLA0A169WAQ50.0A0A169WAQ5_DAUCS; Uncharacterized protein