PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010654
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 363aa    MW: 41194.2 Da    PI: 4.579
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010654genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.2e-29196253359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC++  gCp++k+ve s +d +++++ Y+geH h+
  DCAR_010654 196 DTWAWRKYGQKPIKGSPYPRNYYRCSTLkGCPARKQVEGSPTDATIFIVSYTGEHAHP 253
                  99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29184255IPR003657WRKY domain
SuperFamilySSF1182902.48E-25187255IPR003657WRKY domain
PROSITE profilePS5081130.848189255IPR003657WRKY domain
SMARTSM007745.8E-33194254IPR003657WRKY domain
PfamPF031061.6E-23196253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MFEILKPTPV VVTLPHKGST KPTAPNVEDW QRILFISRDI WLKSLSQNRE LTIKFLFTYV  60
TMSDGDWDLY AVVRSCTTSA SVVDQNRMED EQEEKEQPFA DQFSFQNDDF TDPLTYGLQN  120
TTADYGLEEI HQPFSNFNAE FENEQVMNYP PQQEPQSNTF TLPISNPSSS TIRSRRRKNQ  180
HLKMVYQMTQ EELSGDTWAW RKYGQKPIKG SPYPRNYYRC STLKGCPARK QVEGSPTDAT  240
IFIVSYTGEH AHPRPTHRSS LAGSTRSKFS AAAALNNIIK STATSSESTS VAPNFSPSTS  300
PHSALTFSPS SVRYENNPDN TVDDTDMVDV DEDDYNEDNN LIHDEEIYSG LDKFDGDDRF  360
FD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-181952561780Disease resistance protein RRS1
5w3x_D3e-181952561780Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240573.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A169WBQ40.0A0A169WBQ4_DAUCS; Uncharacterized protein
STRINGMigut.F00276.1.p3e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-49WRKY family protein