PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010739
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 315aa    MW: 34599.4 Da    PI: 6.5159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010739genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10226269755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++ +L++l+P+       K++ +++LekA+ Y+k Lq
  DCAR_010739 226 IAAKNRRERISERLKTLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 269
                  5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.612219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-14220277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-13220277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-11221273No hitNo description
SMARTSM003532.6E-12225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7227269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALVKDQRPH DHAQDEKELA HYQQHISSWG MYEFNDGDKS SGGNTNASII TRSSSLSSPS  60
STNSSGALGV YRAMNNYQQQ EEGHSVINFK PCYDNDNYLS QAGHIGSFLS FASDDYSSIL  120
DQNQVRGMSN VRLLENINSL QTATSTMEGN LNYGNHESFA WLNSTEATMP PSGIDQELSA  180
EELSMNKRPH TGESMQSLKK QCTTTSKKGK PKPSSTPCAS KDPQSIAAKN RRERISERLK  240
TLQDLVPNGS KVDLVTMLEK AISYVKFLQL QVKVLATDEL WPVQGGKAPE LKQVKDVIDS  300
ILASQRDATD SSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241136.10.0PREDICTED: transcription factor bHLH83-like
TrEMBLA0A161WTH20.0A0A161WTH2_DAUCS; Uncharacterized protein
STRINGVIT_14s0006g01470.t012e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-51RHD SIX-LIKE 1