PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010751

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 173aa MW: 20411.5 Da PI: 10.0887

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010751	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.8e-16	98	145	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +Ed ll ++ +++G g W++++r+ g++R++k+c++rw++yl DCAR_010751 98 KGAWGSDEDTLLTKCMHKYGEGKWSLVPRRAGLNRCRKSCRLRWLNYL 145 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.866	93	149	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	93	147	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-12	97	147	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	98	145	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.37E-18	99	172	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-8	100	145	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-4	148	172	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MYNEFLRYSL VPGYVRWPPV IIQKRLFLQQ PVRQKEAVIF EDEEDLEEDE DSEQGDQPSQ 60 QPRRSVKYKK CDKRFYINKA RNTVLKPMTS GNDSKLRKGA WGSDEDTLLT KCMHKYGEGK 120 WSLVPRRAGL NRCRKSCRLR WLNYLRPTIK RGEFGADEVD LMMRLHKLLG NR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A161XZ01	1e-125	A0A161XZ01_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	8e-37	myb domain protein 113

Link Out ? help Back to Top
Phytozome	DCAR_010751