PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010759

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 343aa MW: 39105.9 Da PI: 6.1244

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010759	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	174	217	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL + +Y+k+L DCAR_010759 174 LMAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTLDYMKEL 217 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.824	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-14	171	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-11	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-8	174	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	175	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00147	175	221	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEQTPHDLLE ELVMAPRRFH ETKFALSDDH QYFPSTGQWS HDSLLNYNDI LESSISYSQL 60 MMLTPRVEPQ ATSFVSCPSS EIQPYFSSYT PPFQVLDELE PTRGHEVNVH DHYNSRNDIS 120 VYDFKETYSC SSSRNVRELS APSEIPVFSI GSFEDDNRAR SKVKKLEGQP SKNLMAERRR 180 RKRLNDRLSM LRSVVPRISK MDRTSILGDT LDYMKELLEK INKLKMQDTQ ANSDQKNSLG 240 NLEEVNKIGE ATAKNTSRFD VRRKEKSTEI NISCAGKPGM VLSTLNTMES LGLDIQQCVV 300 SCFNDFTLEA SCSEAEEHRR FISDEDLRRA LSRNAGYGGR CL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEQTPHDLLE ELVMAPRRFH ETKFALSDDH QYFPSTGQWS HDSLLNYNDI LESSISYSQL  60
MMLTPRVEPQ ATSFVSCPSS EIQPYFSSYT PPFQVLDELE PTRGHEVNVH DHYNSRNDIS  120
VYDFKETYSC SSSRNVRELS APSEIPVFSI GSFEDDNRAR SKVKKLEGQP SKNLMAERRR  180
RKRLNDRLSM LRSVVPRISK MDRTSILGDT LDYMKELLEK INKLKMQDTQ ANSDQKNSLG  240
NLEEVNKIGE ATAKNTSRFD VRRKEKSTEI NISCAGKPGM VLSTLNTMES LGLDIQQCVV  300
SCFNDFTLEA SCSEAEEHRR FISDEDLRRA LSRNAGYGGR CL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	183	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF994964	5e-51	KF994964.1 Vitis riparia inducer of CBF expression 4 (ICE4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239720.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-70	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A161WTJ0	0.0	A0A161WTJ0_DAUCS; Uncharacterized protein
STRING	EMJ06619	1e-84	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-72	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	DCAR_010759

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]