PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010766
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 523aa    MW: 58274.8 Da    PI: 6.1187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010766genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13368413555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er RR+r+N+ f  L   +P +     kKl+Ka+iL+ A+eYIk L+
  DCAR_010766 368 HVVAERLRRQRLNKLFIGLSATIPGL-----KKLDKASILKDAIEYIKRLE 413
                  8899**********************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.101.4E-705221IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.4E-709221IPR017986WD40-repeat-containing domain
SMARTSM003203.2E-71150IPR001680WD40 repeat
PfamPF004001.2E-41449IPR001680WD40 repeat
CDDcd002002.03E-6616223No hitNo description
PROSITE profilePS5029452.99418228IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.751859IPR001680WD40 repeat
SMARTSM003203.4E-125392IPR001680WD40 repeat
PfamPF004001.8E-105692IPR001680WD40 repeat
PROSITE profilePS5008217.45960101IPR001680WD40 repeat
PRINTSPR003201.4E-87993IPR020472G-protein beta WD-40 repeat
PROSITE patternPS0067807993IPR019775WD40 repeat, conserved site
SMARTSM003201.7E-1195134IPR001680WD40 repeat
PfamPF004002.9E-998134IPR001680WD40 repeat
PROSITE profilePS5008218.963102143IPR001680WD40 repeat
PROSITE patternPS006780121135IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-8121135IPR020472G-protein beta WD-40 repeat
SMARTSM003201.5E-10137176IPR001680WD40 repeat
PfamPF004008.3E-9138176IPR001680WD40 repeat
PROSITE profilePS5008215.321144185IPR001680WD40 repeat
PRINTSPR003201.4E-8163177IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM003200.9179219IPR001680WD40 repeat
PROSITE profilePS5088815.193363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15367423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10368413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-15368427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-12368415No hitNo description
SMARTSM003534.1E-13369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048188Cellular ComponentSet1C/COMPASS complex
GO:0042393Molecular Functionhistone binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAIPEEPTIK PYTLQHTLNA HKRAISAVKF SDDGALLGTS SADKTVKTWS PHTGALIQDF  60
SGHDLGISDL AFSPDNRFLA TCSDDKTVRL WDLNAATPIK TLTGHTNFVF CVNFNPQSNL  120
LVSGSFDETV RVWDLKSGKC LKVLPAHSDP VTAVHFDKEG ALIVSSSYDG LCRIWDVSTG  180
HCQKTLIDDE NPPVSFAKFS PNGKFILVGT LDNTLGIEDP NFFLTSNIVN PIYNDTDFVS  240
PYLESYTNYE TSLNQQSVEG EVLEINTADD KLSRSNQVIN TNIPASSTDR NLISFRYPSS  300
TPLEEHHHQY DDGFVHKAAV QPQQLFDFSG NESEASLHKY SQEYLCGDQA MKIDKSITNK  360
SHLQVHEHVV AERLRRQRLN KLFIGLSATI PGLKKLDKAS ILKDAIEYIK RLEEQSKALE  420
EEAGKQLGKP KHPNRIDTSD YHSSALISDI QARFCEGEIL IKIHCKQPKQ VTHKLLGELE  480
KLHLTIINCS VIPFDESHDI TIIAQVLKSN AFDIQIAFVW CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4cy3_A1e-98821912292PROTEIN WILL DIE SLOWLY
4cy5_A1e-98821912292PROTEIN WILL DIE SLOWLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166AW580.0A0A166AW58_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-22bHLH family protein