PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010783
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26215.7 Da    PI: 8.8057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010783genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.22.9e-131091392656
                  -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                  s+++++eLAk+l+L  rqV vWFqNrRa+ k
  DCAR_010783 109 SRKQKQELAKELNLRPRQVEVWFQNRRARTK 139
                  789**************************98 PP
2HD-ZIP_I/II92.54.8e-301091742591
  HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  + ++K+ela+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eL+ +l
  DCAR_010783 109 SRKQKQELAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTDENRRLQKEVQELK-AL 174
                  5789***********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0011102145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-12109139IPR009057Homeodomain-like
PfamPF000461.1E-10109139IPR001356Homeobox domain
CDDcd000865.53E-11109142No hitNo description
PROSITE profilePS5007113.345109141IPR001356Homeobox domain
SuperFamilySSF466892.01E-11109150IPR009057Homeodomain-like
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
SMARTSM003405.4E-26141184IPR003106Leucine zipper, homeobox-associated
PfamPF021833.3E-11141175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGFDRNVCET GLKLGLGFSP AVEIIPAKAG NHSHPCRPKA VALSFEPSLT LGLVSGDKVN  60
DGFVIKPSSC EILYRQDSTG ASSFSNASVK REREQRGSEE TETTARVSSR KQKQELAKEL  120
NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KKCCETLTDE NRRLQKEVQE LKALKVAQPL  180
YMQLPAATLT MCPSCERVGG SGGPPATSAD NSSKETFSSI TTPKPHFYNS FPNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237931.11e-170PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466046e-64HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A166AWK11e-176A0A166AWK1_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000551993e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-66HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]