PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010862
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 325aa    MW: 35647.4 Da    PI: 9.8346
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010862genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31252309359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  DCAR_010862 252 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLIVTYEGDHNHS 309
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17201248IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-33239309IPR003657WRKY domain
PROSITE profilePS5081130.779245311IPR003657WRKY domain
SuperFamilySSF1182905.36E-27247309IPR003657WRKY domain
SMARTSM007744.8E-38250310IPR003657WRKY domain
PfamPF031063.5E-27252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAIELMPFG YNNGNNNYMD EKTAVQEAAS GLESVGKLIK LLSQQQQQQG QVEENESSDD  60
KKIEMDCRAV ADVAVTKFKK VISLLDRTRT GHARFRRAPV FSKPVPVSPE NKVYCPTPIQ  120
QIPPPGNYQM DQNSYGVSRN GVIDRKESAS KTISFSYSPA ISRANSFMSS LTGDTSESKQ  180
QMSSSSGFQV GKPPLSACLM KRKCSSSENG GSGKCSGSSG RCHCSKRSRK LRMKRVIRVP  240
AISMKLSDIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPSMLIV  300
TYEGDHNHSL SLPDSSPAHI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21238310273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243315.10.0PREDICTED: probable WRKY transcription factor 15 isoform X1
SwissprotQ9STX03e-86WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A166AYI10.0A0A166AYI1_DAUCS; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-72WRKY DNA-binding protein 7