PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010936

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 226aa MW: 24235 Da PI: 8.5962

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010936	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rk+ k+s DCAR_010936 23 PEHLRCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKSAKRS 82 57899**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	19	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	25	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MPSETSVQRP TKPTQVGAPP PEPEHLRCPR CDSTNTKFCY YNNYNFSQPR HFCKACRRYW 60 THGGTLRDIP VGGGTRKSAK RSRSSSSSSL FSDHEYRHMP TPTTPFFLPL SNGDHNGVSV 120 PFVNNGKPCY NNMAGSFTSL LGTQAPGLLS LNGFGLGLGS HGFEDVGFGL GRNVWAFPPV 180 GPGGVTESVG GNTWQVESGE NGFTNVDTTF SLPDLAISTP GNAMK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238755.1	1e-166	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	6e-51	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A166B0A7	1e-164	A0A166B0A7_DAUCS; Uncharacterized protein
STRING	Migut.H00486.1.p	4e-75	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	7e-42	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	DCAR_010936

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]