PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010938
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 249aa    MW: 28685.3 Da    PI: 10.2261
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010938genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1521104999
                  HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  d +k   l +p kfa+ h g    +k+ tl+   +  sW v+      +++ ++++GWk F+k + L+ gD++vF++ ++sef  +v +f++
  DCAR_010938  21 DFSK--KLLIPPKFARLHPGT--LPKKCTLKPtGTQSSWPVRT--ILIDNHLYFKEGWKAFAKHHSLQYGDMLVFRYAQDSEF--YVDMFDN 104
                  3333..49**********766..66678877735569******..5556669*************************999999..9999986 PP
2B348.61.5e-15145238199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+ ++ + +v ++g l +p +f + +++k  ++ t +l +   + W v+l   ++++r v++kGW++F+k+n L+  D++vF+l++ ++ ++ v++f+
  DCAR_010938 145 FKRTMQKTNVKSNGYLQIPLQFGRMYMKK-ITNYTSKLVS-LDKGWVVQL--LRGDKR-VFKKGWSNFAKENSLELDDVCVFQLINAKDNTFEVTIFK 237
                  667888899999**************544.3455666666.4589*****..888888.79************************999999*****99 PP

                  S CS
           B3  99 k 99 
                  k
  DCAR_010938 238 K 238
                  7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-218107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-228107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.84411105IPR003340B3 DNA binding domain
CDDcd100176.99E-1512103No hitNo description
SMARTSM010191.6E-1114105IPR003340B3 DNA binding domain
PfamPF023623.8E-1320104IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-19138238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-19139238IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-17143237No hitNo description
SMARTSM010198.4E-13145239IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633145239IPR003340B3 DNA binding domain
PfamPF023621.7E-13146238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTKTLNRSRR NPSFMKLLFS DFSKKLLIPP KFARLHPGTL PKKCTLKPTG TQSSWPVRTI  60
LIDNHLYFKE GWKAFAKHHS LQYGDMLVFR YAQDSEFYVD MFDNTCCLRE PVATSPALIL  120
PGQGNKNHPE TAADELILSS EFPSFKRTMQ KTNVKSNGYL QIPLQFGRMY MKKITNYTSK  180
LVSLDKGWVV QLLRGDKRVF KKGWSNFAKE NSLELDDVCV FQLINAKDNT FEVTIFKKPV  240
EYSLFSRC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241101.11e-180PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A166B0C00.0A0A166B0C0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-12B3 family protein