PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010940
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1194aa    MW: 136189 Da    PI: 10.3355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010940genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.1e-12241031297
                  HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  + + l +p+k+++ h   ++ +k+ +l    + +s++v+   ++ +++ +++kGWk F++ + Lk gD ++F+++++sef   v v+
  DCAR_010940  24 S-KKLLIPRKYVSLHR--ETLGKECVLWPsHTRESFRVRT--KNIDDELYFKKGWKVFARTHSLKFGDLLIFRHVRDSEF--DVDVL 103
                  3.4599******9996..4466677776625558999999..********************************999999..66665 PP
2B343.65.4e-14159255299
                  EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  fk+ +++  lk  g l++p ++a++++++  ++ ++++e  s ++W  k+   r +++r++l +GW+  +++ +++egD++vF+l+++++ +l++++f
  DCAR_010940 159 FKKIMKAAELKPgGYLYVPARYAKDYMKD--GTNDVKIEY-SDKVWIAKVLRrRAGDRRTFLDSGWSYLARESNIQEGDVCVFQLISTEDNTLKLTIF 253
                  5555555555554899**********877..555788666.88*******663666666**************************************9 PP

                  -S CS
           B3  98 rk 99 
                  ++
  DCAR_010940 254 KN 255
                  86 PP
3B345.81.1e-14306398199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k+++p++v ++g+l +p +fa+++  ++ +++++++ d    +W ++   + +  r++l+ GW++ ++ n L+++D++vF+l+++++ +l++++f+
  DCAR_010940 306 FIKIMKPAYVRSNGCLHVPEHFAKKYLRNSSRDVKIKFLD---DVWILRR--QPSEVRTFLG-GWSDLARKNSLQVNDVCVFQLINTKDCTLKLTIFK 397
                  89************************77778999999999...9******..9999999999.**********************9999999999998 PP

                  S CS
           B3  99 k 99 
                  +
  DCAR_010940 398 Q 398
                  6 PP
4B343.75e-146006801499
                  T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + l +p+k++  hg  ++ +k+ +l+ ++   sW+v+   +  +++ +++kGWk+F+k + L+ gD ++F+++++sef   v v++k
  DCAR_010940 600 KKLLIPRKYVMLHG--ETLGKECVLRPTHTsDSWRVRT--KCIDDELYFKKGWKKFAKHHSLQFGDLLIFRHVQNSEF--DVDVVDK 680
                  3499******9998..559999****96655*******..899999***************************99999..8888776 PP
5B346.66.2e-15732828199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f k++++++v++ g l ++ +f +eh+++  +   ++++ ++++ W +k+  + + gr++l++GW++ +++n L+++D++vF+l+++++ ++ +++f+
  DCAR_010940 732 FYKIMKSAYVGSGGYLHVSFDFSKEHMKDYSG--YVKIRLSESKAWMIKVLRQASEGRTLLSAGWSNLARENSLQVNDVCVFQLINKKDYTFQLTIFK 827
                  7899**********************877444..68888999********99999999***************************9999999999987 PP

                  S CS
           B3  99 k 99 
                  +
  DCAR_010940 828 H 828
                  5 PP
6B333.11e-10880961490
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  v +++ + k++ l +p  f  +++ k+e++ +++l+   g++ +v +  r+ ++++ ++kGW  Fvk+n +++ D++v++l++++++
  DCAR_010940 880 V-MHPAYVKRAFLHVPSAFH-NYMCKEEGENEVRLQC-LGKERKVIM--RNVREQCRISKGWGAFVKENSIEVDDVCVLELISKEDA 961
                  3.455556666799****98.8888888999***887.79999****..999999*************************9987655 PP
7B338.32.4e-1296510421799
                   E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                   ++p kf++ h g    +++  l+ ++   sW v++  ++  +  +++kGW +F++ + Lk++D +vF++d++s f   v +f++
  DCAR_010940  965 MIPPKFVRLHRGT--LPRKCLLKASHTqYSWPVRV--KQMNNFLYFKKGWGKFAQFHSLKSRDLLVFRYDQDSVF--SVDMFDE 1042
                   89********766..56677777755549******..999999***************************99999..8888875 PP
8B357.91.9e-1810981191199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                   f+ v+ p +v + g + +p +fa+ h ++  ++++l++e    ++W++ +  +++s+r  ltkGW  Fv++ngLk gD++vF+l++ ++f+l++++
  DCAR_010940 1098 FILVMQPIYVKSGGYMHVPQEFANMHLEE--SPRELKIEV-GDKTWSIGIVKDRRSRR--LTKGWCPFVRENGLKLGDVCVFQLTNAQDFTLKLSI 1188
                   778999*****************999533..555677554.66*******77777776..************************999********* PP

                   E-S CS
           B3   97 frk 99  
                   f++
  DCAR_010940 1189 FSS 1191
                   986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-1712107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.3212106IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1712109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-1113104No hitNo description
SMARTSM010191.4E-515106IPR003340B3 DNA binding domain
PfamPF023627.1E-92399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17152256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-15152256IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-13157254No hitNo description
SMARTSM010199.5E-11159256IPR003340B3 DNA binding domain
PfamPF023622.5E-12159255IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661159256IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-16299399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-15301392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-15304397No hitNo description
PROSITE profilePS5086311.434306399IPR003340B3 DNA binding domain
SMARTSM010192.0E-10306399IPR003340B3 DNA binding domain
PfamPF023621.1E-13306398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-19582681IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-20584682IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943587681IPR003340B3 DNA binding domain
SMARTSM010192.8E-11590681IPR003340B3 DNA binding domain
CDDcd100171.99E-11590679No hitNo description
PfamPF023623.4E-10600678IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18726827IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-18726827IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-15730827No hitNo description
PROSITE profilePS5086313.507732829IPR003340B3 DNA binding domain
SMARTSM010191.2E-12732829IPR003340B3 DNA binding domain
PfamPF023627.0E-13732827IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-13871960IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-11872959IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-7875956No hitNo description
PROSITE profilePS508636.358876960IPR003340B3 DNA binding domain
SMARTSM010190.013877969IPR003340B3 DNA binding domain
PfamPF023621.2E-8880961IPR003340B3 DNA binding domain
CDDcd100173.28E-99651041No hitNo description
SuperFamilySSF1019361.18E-169651045IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-109651042IPR003340B3 DNA binding domain
PROSITE profilePS5086311.429661043IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-169661045IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0129701043IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-2010911190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-1810911190IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-1610961190No hitNo description
PROSITE profilePS5086314.39510981192IPR003340B3 DNA binding domain
SMARTSM010192.7E-1310981192IPR003340B3 DNA binding domain
PfamPF023621.4E-1610981191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    Send to blast
MARRPNRPAR IRPYFVKVIC KRFSKKLLIP RKYVSLHRET LGKECVLWPS HTRESFRVRT  60
KNIDDELYFK KGWKVFARTH SLKFGDLLIF RHVRDSEFDV DVLDMNGTPR EPVLSENDHI  120
LGEVARAPPS HIGRQKNITE TAALTGADAL ISSSDAPFFK KIMKAAELKP GGYLYVPARY  180
AKDYMKDGTN DVKIEYSDKV WIAKVLRRRA GDRRTFLDSG WSYLARESNI QEGDVCVFQL  240
ISTEDNTLKL TIFKNNNAGG PKTSTSQTGR SKMSTLQTGR SKKSILQTEA ISSAEALAAS  300
SEYHSFIKIM KPAYVRSNGC LHVPEHFAKK YLRNSSRDVK IKFLDDVWIL RRQPSEVRTF  360
LGGWSDLARK NSLQVNDVCV FQLINTKDCT LKLTIFKQTS GENQGHKQCQ AKLKSRSSYS  420
VKSKKYSKRA FEEAKESEAL PNKSFKCGED QKHGHLAEVK LESSDLDLEI TLVSKGPSPS  480
DKALEDAKKF QSESKNTSFV AVMRPAYINY SYLHVPKTFV DEMDKKASGS QLKLQSSNCE  540
MNAKLIFMKL PGMLGAKIRM LLFMLLSTLA APLLDMARRP KSSTTTKRVF IKVLFSGFMK  600
KLLIPRKYVM LHGETLGKEC VLRPTHTSDS WRVRTKCIDD ELYFKKGWKK FAKHHSLQFG  660
DLLIFRHVQN SEFDVDVVDK SGIPRKTLAF RTDQVMKDSA PVPTSRKKKA ILQTAALTAA  720
EALIASSEYP SFYKIMKSAY VGSGGYLHVS FDFSKEHMKD YSGYVKIRLS ESKAWMIKVL  780
RQASEGRTLL SAGWSNLARE NSLQVNDVCV FQLINKKDYT FQLTIFKHIS GGNQKHKNCK  840
VKLKSSDSEP IPKSKKNSDK AFEEAERFKS MSKHHSIITV MHPAYVKRAF LHVPSAFHNY  900
MCKEEGENEV RLQCLGKERK VIMRNVREQC RISKGWGAFV KENSIEVDDV CVLELISKED  960
ALIKMIPPKF VRLHRGTLPR KCLLKASHTQ YSWPVRVKQM NNFLYFKKGW GKFAQFHSLK  1020
SRDLLVFRYD QDSVFSVDMF DESCCSKKLV TTSQNEKPRT KSSPAIESSK FKTFVNHKKP  1080
GGLIAAEELM ASSEFPKFIL VMQPIYVKSG GYMHVPQEFA NMHLEESPRE LKIEVGDKTW  1140
SIGIVKDRRS RRLTKGWCPF VRENGLKLGD VCVFQLTNAQ DFTLKLSIFS STT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-13157118921143B3 domain-containing transcription factor VRN1
4i1k_B4e-13157118921143B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239764.11e-161PREDICTED: B3 domain-containing protein Os03g0212300-like
TrEMBLA0A166B0D30.0A0A166B0D3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-14related to vernalization1 1