PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010972

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 227aa MW: 26065.6 Da PI: 10.3541

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010972	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.1	2.2e-40	6	149	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnss 86 + +kdrhski T++g+RdRRvRls+++a+rfFdL d L fdk+s+t+ WLl++++pai++l+++ s +++ DCAR_010972 6 TFRKDRHSKILTAQGPRDRRVRLSIQVARRFFDLHDTLRFDKASETLGWLLTNSQPAIDDLVKNkrsscaavdegcsR------------SDTTE--- 88 569***********************************************************44333333222210............11111... PP TCP 87 sg...............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + ++ +++ s + +++a+ a+ la+esrakarararertr+km+ + DCAR_010972 89 -AaemrdkhymknttsiDNTQDQRVSMQLEEKAKLASLLARESRAKARARARERTRQKMCVR 149 .1112233344555665555555566666666666799999*****************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.0E-39	7	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.709	8	66	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.361	128	145	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKPPHTFRKD RHSKILTAQG PRDRRVRLSI QVARRFFDLH DTLRFDKASE TLGWLLTNSQ 60 PAIDDLVKNK RSSCAAVDEG CSRSDTTEAA EMRDKHYMKN TTSIDNTQDQ RVSMQLEEKA 120 KLASLLARES RAKARARARE RTRQKMCVRH LLGTNKLLPH DFRIAANHLS TWNELSYLHN 180 ISCRAPYFSV GTDQVGQSRN PELLSETSKY SLHLFYMSIL TFDQSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241142.1	1e-154	PREDICTED: transcription factor CYCLOIDEA
TrEMBL	A0A166B186	1e-168	A0A166B186_DAUCS; Uncharacterized protein
STRING	XP_010265281.1	8e-29	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_010972