PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011049
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 413aa    MW: 45863 Da    PI: 6.9598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011049genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-0693115123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs++ +L +H+r+H
  DCAR_011049  93 HVCKKCGGEFSSSKSLAVHMRSH 115
                  79********************9 PP
2zf-C2H211.20.0011126145221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C+ Cgk F +   L  H+r
  DCAR_011049 126 TCKECGKIFGSLKALFGHMR 145
                  6******************8 PP
3zf-C2H211.90.00068355377123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C  C+k+F++   L  H r H
  DCAR_011049 355 YQCLTCSKVFKSGQALGGHKRAH 377
                  9*************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.42E-5733No hitNo description
SMARTSM003550.731032IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0781032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PfamPF139120.0131233IPR007087Zinc finger, C2H2
SuperFamilySSF576677.49E-1092147No hitNo description
Gene3DG3DSA:3.30.160.601.2E-593116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002593115IPR015880Zinc finger, C2H2-like
PfamPF138946.4E-493115No hitNo description
PROSITE profilePS5015711.5193120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM003550.015125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
PfamPF139122.7E-8127149IPR007087Zinc finger, C2H2
SMARTSM003550.014275297IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.49E-8275297No hitNo description
PfamPF139121.3E-6275297IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429275302IPR007087Zinc finger, C2H2
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SuperFamilySSF576677.49E-8350377No hitNo description
PROSITE profilePS5015710.159355377IPR007087Zinc finger, C2H2
SMARTSM003550.28355377IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-9355379IPR007087Zinc finger, C2H2
PROSITE patternPS000280357377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLQEGQEHRF FCRFCNKGFV SGNCLGGHMR GHLDLISAEK CGENYGGGSG SEEEELSAEI  60
KDSLSSEMDV EATYGLRENP RKSWRCWDSD TIHVCKKCGG EFSSSKSLAV HMRSHSTGRR  120
KEETATCKEC GKIFGSLKAL FGHMRCHPKQ SRVSNQLPLE LVSTIRKKKR SRTCYSKTIP  180
ILSEACSDMN ASSSIAGTEI DEVEEAATTL MIMSRDYEGW KVVEINGLDL DRLNQSKTSK  240
LVDQVFELMG KTCDGYIPSA SDDVVLKDSE RIGEFKCKTC DKVFHSVQAL NGHQHMHRTN  300
DGCTELKVER CRELTQTNFL LAPVVDSQLE CAKNSLEKGT GVEVRSCDMK KSNCYQCLTC  360
SKVFKSGQAL GGHKRAHYSG PNVSKVEETV LMDSAFPDRV EIPEILEQIA CQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241112.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A161WU910.0A0A161WU91_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-17C2H2-like zinc finger protein