PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011084
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 316aa    MW: 35861.1 Da    PI: 6.5091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011084genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-54111371129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yL++kv + ++++   i +vd++kvePwdLp  +k +e+ewyfF+ +dkky+tg+r+nratk+gyWkatgkdke+++  ++
  DCAR_011084  11 LPPGFRFHPTDEELITHYLHPKVYNINFSA-APIGTVDLNKVEPWDLPGIAKMGEDEWYFFCVKDKKYPTGSRTNRATKAGYWKATGKDKEIYR-LKK 106
                  79*************************999.77***************87788999**************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfy+grap+g+kt+Wvmhe+rle
  DCAR_011084 107 LVGMKKTLVFYEGRAPRGHKTNWVMHEFRLE 137
                  ****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-626157IPR003441NAC domain
PROSITE profilePS5100557.26211157IPR003441NAC domain
PfamPF023652.9E-2912136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEKLSNEHIE LPPGFRFHPT DEELITHYLH PKVYNINFSA APIGTVDLNK VEPWDLPGIA  60
KMGEDEWYFF CVKDKKYPTG SRTNRATKAG YWKATGKDKE IYRLKKLVGM KKTLVFYEGR  120
APRGHKTNWV MHEFRLEGKY SNNATTNDWA ISRVFHKDSS GKKTHISLVK TGESQHSNLP  180
ALIDTSRTSQ GDGSHVTCFS AQSENIKPHE DLFENLNFFV PPASSSSPAL PIQNTYFPTQ  240
FSPQHPESFL MQDESIFNYF LENNGEQTKT STKTEYSEDT CGMSTDLSCG QRCREDEAYP  300
ITSGGPVDLD CLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-53816314171NO APICAL MERISTEM PROTEIN
1ut4_B4e-53816314171NO APICAL MERISTEM PROTEIN
1ut7_A4e-53816314171NO APICAL MERISTEM PROTEIN
1ut7_B4e-53816314171NO APICAL MERISTEM PROTEIN
3swm_A4e-53816317174NAC domain-containing protein 19
3swm_B4e-53816317174NAC domain-containing protein 19
3swm_C4e-53816317174NAC domain-containing protein 19
3swm_D4e-53816317174NAC domain-containing protein 19
3swp_A4e-53816317174NAC domain-containing protein 19
3swp_B4e-53816317174NAC domain-containing protein 19
3swp_C4e-53816317174NAC domain-containing protein 19
3swp_D4e-53816317174NAC domain-containing protein 19
4dul_A4e-53816314171NAC domain-containing protein 19
4dul_B4e-53816314171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240731.10.0PREDICTED: NAC domain-containing protein 92
SwissprotQ9FLJ21e-100NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A166B3Y50.0A0A166B3Y5_DAUCS; Uncharacterized protein
STRINGVIT_14s0108g01070.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-100NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]