PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_011136

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 245aa MW: 27372.9 Da PI: 7.2649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011136	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	36	80	1	49
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 +r+ + erEr Rd++N+ f+eL + l ++ ++ K Ka++L + ++ DCAR_011136 36 KRVHKAERERSKRDHMNTLFFELGKSLEPD---HHDK-GKASTLNHCIR 80 79999*******************999997...5555.36666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.99E-5	33	89	No hit	No description
PROSITE profile	PS50888	9.851	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-10	35	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-6	36	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVSEDPVSRR NQIDVAAKKS NKGSLPSKKN ILKAPKRVHK AERERSKRDH MNTLFFELGK 60 SLEPDHHDKG KASTLNHCIR LLHDLLAQVD CLRKENSALL SESHYVSIEK DELVEDNSAL 120 KAQIGKLQTE IDEKIQPPSL WGFNQPQSQI EGNLEQQLEG PHIVVPLADH ATPTAPIVSP 180 IFVMPLQDDS QVHPETDTVK ATLRHPPHIS RPHARYPSPS DSWPSQILSE KPKGTEHITQ 240 HSSC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238553.1	1e-180	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A166B5D9	1e-178	A0A166B5D9_DAUCS; Uncharacterized protein
STRING	XP_010258393.1	6e-70	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	6e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_011136