PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011209
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 289aa    MW: 33115.2 Da    PI: 4.4804
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011209genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1965118356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t+eq++ Le+ Fe ++++  +++++LAk+lgL+ rqV vWFqNrRa++k
  DCAR_011209  65 KKRRLTAEQVRLLEKSFETENKLELDRKTQLAKNLGLQPRQVAVWFQNRRARWK 118
                  56789************************************************9 PP
2HD-ZIP_I/II132.51.6e-4264155192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl++eqv+lLE+sFe+e+kLe +rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l+++ ++++k++e+L++e+ 
  DCAR_011209  64 EKKRRLTAEQVRLLEKSFETENKLELDRKTQLAKNLGLQPRQVAVWFQNRRARWKTKQLERDYDHLKSSYDSLVSDYDSIRKDNEKLKAEVV 155
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-1956122IPR009057Homeodomain-like
PROSITE profilePS5007117.60560120IPR001356Homeobox domain
SMARTSM003892.8E-1863124IPR001356Homeobox domain
CDDcd000862.64E-1765121No hitNo description
PfamPF000469.8E-1765118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-2066127IPR009057Homeodomain-like
PRINTSPR000315.8E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000315.8E-6100116IPR000047Helix-turn-helix motif
PfamPF021832.4E-18120162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDSGHFFFNN PPCNGNMSFL GNCDSVFRGA RSVINMEDSS KRRPFFSSPD ELFDEEYYDE  60
QLPEKKRRLT AEQVRLLEKS FETENKLELD RKTQLAKNLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDHLK SSYDSLVSDY DSIRKDNEKL KAEVVSLSEK LQAKEIVREP TPDKNPEEVV  180
SAEAAGGGVS VTVKVEDRLS TETGGSAVVE EDGRQVMDSG DSYFPNDNDQ VNDYSRCLSM  240
DQVHSDEDDG SGDGRNSYFY HEFVEVDRVE PEAHHRDEGE ALGWWVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6645931e-66EU664593.1 Daucus carota subsp. sativus clone DCG321 RFLP marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237660.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-88HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A161WUP20.0A0A161WUP2_DAUCS; Uncharacterized protein
STRINGEOY023591e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-82homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]