PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011344
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 360aa    MW: 40542.1 Da    PI: 6.7196
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011344genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.31.1e-411252753137
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssasnsssg... 88 
                   kkdrhski T  g+RdRR+Rls+++a+rfF Lqd LGfdk+skt+eWLl+q+k aikeltg++++ +         s+ce +s   + s    +   
  DCAR_011344 125 SKKDRHSKINTIHGPRDRRMRLSLDVARRFFGLQDILGFDKASKTVEWLLRQSKMAIKELTGQTNKGSdtfslwasaSDCEVVSGIDEFS---VPeta 219
                  69*************************************************************555554444443344452222222222...11333 PP

          TCP  89 .......kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkln 137
                         + +++ + k+ ++ +++ ++  ++kesr+kar+rarert++k+r++++l+
  DCAR_011344 220 sttktdgSPSTQRKnKRIRRVRKP-TFYPFDKESREKARERARERTKDKKRQQQQLD 275
                  444555544444442444444444.479************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-43125270IPR005333Transcription factor, TCP
PROSITE profilePS5136933.776126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.5250267IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MYLSQCNLKK ITANNMYPSN GYVNATFPEY DFNPNSEIQD LSSSNSSCLF NFPSPLNQYG  60
DEAIYLQQFH AILSQNNLDS PGALNEMTVP DITAYSCENN NSGTVMEHVG AGESTDQPPE  120
KKKLSKKDRH SKINTIHGPR DRRMRLSLDV ARRFFGLQDI LGFDKASKTV EWLLRQSKMA  180
IKELTGQTNK GSDTFSLWAS ASDCEVVSGI DEFSVPETAS TTKTDGSPST QRKNKRIRRV  240
RKPTFYPFDK ESREKARERA RERTKDKKRQ QQQLDDQHST NLMTWSPIGS SKDLAGSSHN  300
TITYNSLPSL DEVEEMQNGC EESINIIDPN LFMIAGNWSP SALLNYQHSE ISHEVLAKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239830.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A166BB480.0A0A166BB48_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-19TCP domain protein 12